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  1. Documentation
  2. How to document: Quarto and Obsidian
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On this page

  • 1 The Importance of Project Documentation
  • 2 Markdown: The Preferred Documentation Format
  • 3 Popular Documentation Tools
    • 3.1 Docusaurus
    • 3.2 Quarto
    • 3.3 Obsidian
    • 3.4 GitBook
    • 3.5 Notion
    • 3.6 Sphinx
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  1. Documentation
  2. How to document: Quarto and Obsidian

How to document: Quarto and Obsidian

Quarto and Obsidian

devops
obsidian
quarto
document
Obsidian is both a Markdown editor and a knowledge base app
Author

albertprofe

Published

Tuesday, June 1, 2021

Modified

Monday, September 22, 2025

1 The Importance of Project Documentation

In the 2024 software development ecosystem, thorough documentation is essential for several reasons:

  1. Knowledge Transfer: Documentation ensures that project knowledge is not siloed within individuals but shared across the team and organization[.
  2. Onboarding: Well-documented projects significantly reduce the time needed for new team members to become productive.
  3. Maintenance: Clear documentation makes it easier to maintain and update software over time, reducing technical debt.
  4. User Adoption: Comprehensive documentation, like that of Kubernetes, facilitates user adoption and reduces support overhead.
  5. Collaboration: Documentation fosters collaboration among team members and with the wider community, especially in open-source projects.

2 Markdown: The Preferred Documentation Format

Markdown has become the go-to format for documentation due to its numerous advantages:

  • Simplicity: Easy to learn and read, even in its raw form.
  • Portability: Can be converted to various formats (HTML, PDF, etc.).
  • Version Control: Works seamlessly with version control systems like Git.
  • Flexibility: Supports embedding of code blocks, images, and links.

3 Popular Documentation Tools

Several tools leverage markdown for creating powerful documentation:

  • Docusaurus: https://docusaurus.io
  • Sphinx: https://www.sphinx-doc.org
  • Quarto: https://quarto.org
  • Obsidian: https://obsidian.md
  • Notion: https://www.notion.so
  • GitBook: https://www.gitbook.com

These tools demonstrate the versatility of markdown in creating various types of documentation, from personal notes to large-scale project documentation like Kubernetes.

The tools can be divided into two groups based on their primary focus and functionality:

Documentation Generators

  • Docusaurus: A static site generator focused on documentation, allowing users to write in Markdown and embed React components. It supports localization, versioning, and content search.
  • Sphinx: A tool for creating intelligent and structured documentation, particularly for Python projects. It offers rich text formatting, automatic API documentation generation, and extensive theme support.
  • GitBook: A modern documentation platform that allows teams to create beautiful and interactive documentation collaboratively. It integrates with GitHub and supports Markdown.

Content Creation and Publishing Tools

  • Quarto: A next-generation tool for authoring documents that combines Markdown with code execution in languages like R, Python, and Julia. It is designed for producing high-quality outputs in various formats like HTML and PDF.
  • Obsidian: A note-taking app that uses Markdown for creating personal knowledge bases. It emphasizes linking notes together and supports a wide range of plugins for enhanced functionality.
  • Notion: An all-in-one workspace that combines note-taking, project management, and database functionalities. It allows users to create documents in a flexible format but is not specifically focused on traditional. documentation.

3.1 Docusaurus

  • Purpose: Building documentation websites
  • Advantage: React-based, allowing for easy customization

3.2 Quarto

  • Specialty: Scientific and technical publishing
  • Strength: Supports multiple languages (R, Python, Julia)

Analyze. Share. Reproduce. You have a story to tell with data—tell it with Quarto.

  • Quarto Intro-Basics
  • Quarto Create Project
  • Quarto Publish
  • Quarto Code
  • more info on: tip-a-day

3.3 Obsidian

  • Focus: Personal knowledge management
  • Key Feature: Networked thought with bidirectional linking

Obsidian

Obsidian is both a Markdown editor and a knowledge base app.

Used in the most basic way, you can edit and preview Markdown files. But its true power lies in managing a densely networked knowledge base.

3.4 GitBook

  • Overview: GitBook is a modern documentation platform that allows teams to create and manage documentation collaboratively.
  • Key Features:
    • Intuitive interface for easy document creation.
    • Supports version control and integration with GitHub.
    • Offers interactive and visually appealing documentation layouts.
  • Use Case: Ideal for documenting APIs, product features, and internal knowledge bases, making it suitable for both technical and non-technical teams.

3.5 Notion

  • Overview: Notion is a versatile collaboration tool that combines note-taking, task management, and documentation in one platform.
  • Key Features:
    • Highly customizable pages with databases, tables, and kanban boards.
    • Real-time collaboration capabilities for team projects.
    • Supports embedding various content types (images, videos, code snippets).
  • Use Case: Great for teams looking to manage diverse documentation needs in a single workspace while allowing for creative layouts.

3.6 Sphinx

  • Overview: Sphinx is an open-source documentation generator primarily used for Python projects but supports multiple programming languages.
  • Key Features:
    • Generates documentation in various formats (HTML, PDF, LaTeX).
    • Supports extensive cross-referencing and automatic indexing.
    • Highly customizable with themes and extensions.
  • Use Case: Best suited for technical documentation where structured content is essential, such as API references and user guides.
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